Leonard and I have talked about inverting the rear fuselage for those (and other) reasons but it always end up being heavier. With 200+ examples flying and no one has (to my knowledge) bent the rear fuselage in a landing yet Leonard is inclined to let well enough alone.
The gear seems the weak link (by design) in a hard landing, I've rebuilt quite a few before the pilot got the hang of it. I THINK if we went to a stronger gear we would start bending fuselages which are more difficult to fix.
Optimization is not the easy part IMO; however, there are a couple of ways to approach it:
1) optimize exactly what you have -- that would require probably doing a FEM to generate loads for the individual structural members of the truss, and then 'right' sizing them.
or
2) looking at alternate configurations where the members are located in a [possibly] more optimal configuration - that would be followed by, or accompanied with it's own optimization.
Without actually doing the work, it would be difficult to tell which is lighter/better.